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version 7.13.0.564 (r2011b)  (MathWorks Inc)
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mcr  (MathWorks Inc)
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The Graphical User Interface (GUI) for the <t>MATLAB</t> implementation of CAMV. The left tree contains a searchable list of protein hits in order of decreasing MASCOT score, each peptide assignment made to that protein, and all possible combinations of PTMs for each scan. The middle panel contains the MS2 scan data with pre-labeled peaks. On the right is a survey of the precursor window of the MS1 scan and a view of any quantitation information associated with the assignment. The peptide ladder at the top summarizes the sequencing information: red for an identified fragment, black for missing. A peak color-coding scheme allows for rapid surveillance of the quality of the match: within tolerance (green), within 1.5x tolerance (magenta), unmatched peak (red), and isotopic peak (yellow). Peptides which are pre-emptively excluded by the software appear in red on the left-hand tree. For these peptides, the reason for preemptive exclusion is displayed at the top left of the MS2 panel in place of the sequence ladder, along with an option to proceed with processing.
Mcr, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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version 7.13.0.564, r2011b  (MathWorks Inc)
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MathWorks Inc version 7.13.0.564, r2011b
The Graphical User Interface (GUI) for the <t>MATLAB</t> implementation of CAMV. The left tree contains a searchable list of protein hits in order of decreasing MASCOT score, each peptide assignment made to that protein, and all possible combinations of PTMs for each scan. The middle panel contains the MS2 scan data with pre-labeled peaks. On the right is a survey of the precursor window of the MS1 scan and a view of any quantitation information associated with the assignment. The peptide ladder at the top summarizes the sequencing information: red for an identified fragment, black for missing. A peak color-coding scheme allows for rapid surveillance of the quality of the match: within tolerance (green), within 1.5x tolerance (magenta), unmatched peak (red), and isotopic peak (yellow). Peptides which are pre-emptively excluded by the software appear in red on the left-hand tree. For these peptides, the reason for preemptive exclusion is displayed at the top left of the MS2 panel in place of the sequence ladder, along with an option to proceed with processing.
Version 7.13.0.564, R2011b, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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version 7.13.0.564, r2011b - by Bioz Stars, 2026-03
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version 7.13.0.564 r2011b  (MathWorks Inc)
90
MathWorks Inc version 7.13.0.564 r2011b
The Graphical User Interface (GUI) for the <t>MATLAB</t> implementation of CAMV. The left tree contains a searchable list of protein hits in order of decreasing MASCOT score, each peptide assignment made to that protein, and all possible combinations of PTMs for each scan. The middle panel contains the MS2 scan data with pre-labeled peaks. On the right is a survey of the precursor window of the MS1 scan and a view of any quantitation information associated with the assignment. The peptide ladder at the top summarizes the sequencing information: red for an identified fragment, black for missing. A peak color-coding scheme allows for rapid surveillance of the quality of the match: within tolerance (green), within 1.5x tolerance (magenta), unmatched peak (red), and isotopic peak (yellow). Peptides which are pre-emptively excluded by the software appear in red on the left-hand tree. For these peptides, the reason for preemptive exclusion is displayed at the top left of the MS2 panel in place of the sequence ladder, along with an option to proceed with processing.
Version 7.13.0.564 R2011b, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/version 7.13.0.564 r2011b/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
version 7.13.0.564 r2011b - by Bioz Stars, 2026-03
90/100 stars
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The Graphical User Interface (GUI) for the MATLAB implementation of CAMV. The left tree contains a searchable list of protein hits in order of decreasing MASCOT score, each peptide assignment made to that protein, and all possible combinations of PTMs for each scan. The middle panel contains the MS2 scan data with pre-labeled peaks. On the right is a survey of the precursor window of the MS1 scan and a view of any quantitation information associated with the assignment. The peptide ladder at the top summarizes the sequencing information: red for an identified fragment, black for missing. A peak color-coding scheme allows for rapid surveillance of the quality of the match: within tolerance (green), within 1.5x tolerance (magenta), unmatched peak (red), and isotopic peak (yellow). Peptides which are pre-emptively excluded by the software appear in red on the left-hand tree. For these peptides, the reason for preemptive exclusion is displayed at the top left of the MS2 panel in place of the sequence ladder, along with an option to proceed with processing.

Journal: Methods (San Diego, Calif.)

Article Title: Computer Aided Manual Validation of Mass Spectrometry-based Proteomic Data

doi: 10.1016/j.ymeth.2013.03.004

Figure Lengend Snippet: The Graphical User Interface (GUI) for the MATLAB implementation of CAMV. The left tree contains a searchable list of protein hits in order of decreasing MASCOT score, each peptide assignment made to that protein, and all possible combinations of PTMs for each scan. The middle panel contains the MS2 scan data with pre-labeled peaks. On the right is a survey of the precursor window of the MS1 scan and a view of any quantitation information associated with the assignment. The peptide ladder at the top summarizes the sequencing information: red for an identified fragment, black for missing. A peak color-coding scheme allows for rapid surveillance of the quality of the match: within tolerance (green), within 1.5x tolerance (magenta), unmatched peak (red), and isotopic peak (yellow). Peptides which are pre-emptively excluded by the software appear in red on the left-hand tree. For these peptides, the reason for preemptive exclusion is displayed at the top left of the MS2 panel in place of the sequence ladder, along with an option to proceed with processing.

Article Snippet: All analyses were performed with the following software versions: Proteowizard: Release 2.0.1749 (used for included data), 3.0.4323 (update included with CAMV distribution) Thermo XCalibur: 2.1.0 SP1.1162 DTA Supercharge: 2.0b1 (part of MSQUANT 2.0b1) MATLAB: 7.13.0.564 (R2011b) MATLAB MCR: 7.16 Mascot: Release 2.1.03, additional support for 2.4.1

Techniques: Labeling, Quantitation Assay, Sequencing, Software